This series takes viewers on a journey to the frontiers of science, where researchers are tackling some of the biggest questions about life and the cosmos. The universe is hiding something. In fact, it is hiding a lot. Everything we experience on Earth, the stars and galaxies we see in the cosmos—all the 'normal' matter and energy that we understand—make up only 5% of the known universe. The other 95% is made up of two mysterious components: 'dark matter' and 'dark energy.' We can’t see them, but we know they’re there. And what’s more —these two shadowy ingredients are locked in an epic battle to control the very fate of the universe.
Now, scientists are trying to shed light on the so-called 'dark sector' as the latest generation of detectors rev up, and powerful telescopes peer deeper into space than ever before to observe how it behaves. Will the discoveries help reveal how galaxies formed? In the series finale, Nova Wonders journeys to the stars and back to investigate what we know —and don’t know. Find out how scientists are discovering new secrets about the history of the universe, and why they’re predicting a shocking future.

The episode begins with Tyson describing how pattern recognition manifested in early civilization as using astronomy and astrology to predict the passing of the seasons, including how the passage of a comet was often taken as an omen. Tyson continues to explain that the origin of comets only became known in the 20th century due to the work of Jan Oort and his hypothesis of the Oort cloud. Tyson then continues to relate the collaboration between Edmond Halley and Isaac Newton in the last part of the 17th century in Cambridge. The collaboration would result in the publication of Philosophiæ Naturalis Principia Mathematica, the first major work to describe the laws of physics in mathematical terms, despite objections and claims of plagiarism from Robert Hooke and financial difficulties of the Royal Society of London. Tyson explains how this work challenged the prevailing notion that God had planned out the heavens, but would end up influencing many factors of modern life, including space flight. Tyson further describes Halley's contributions including determining Earth's distance to the sun, the motion of stars and predicting the orbit of then-unnamed Halley's Comet using Newton's laws. Tyson contrasts these scientific approaches to understanding the galaxy compared to what earlier civilizations had done, and considers this advancement as mankind's first steps into exploring the universe. The episode ends with an animation of the Milky Way and Andromeda galaxies' merging based on the principles of Newton's laws.

Discover the Eras of the Universe and the answer to this big question: When Will Time End? Once the notion that the universe started with a rapid inflation nicknamed the Big Bang became accepted by the majority of scientists, many possible fates are predicted by rival scientific hypotheses, including futures of both finite and infinite duration. The ultimate fate of the universe is dependent on the shape of the universe and what role Dark energy will play as the universe ages.

Sagan reflects on the future of humanity and the question of 'who speaks for Earth?' when meeting extraterrestrials. He discusses the very different meetings of the Tlingit people and explorer Jean-François de La Perouse with the destruction of the Aztecs by Spanish conquistadors, the looming threat of nuclear warfare, and the threats shown by destruction of the Library of Alexandria and the murder of Hypatia. The episode ends with an overview of the beginning of the universe, the evolution of life, and the accomplishments of humanity and makes a plea to mankind to cherish life and continue its journey in the cosmos. The Cosmos Update notes the preliminary reconnaissance of planets with spacecraft, the fall of the Berlin Wall and the end of apartheid in South Africa, and measures towards the reduction of nuclear weapons.

In episode two, Professor Brian Cox is off to India, where he assesses arguably the first evidence of rational thought in literature, the poetry of the Vedic monks. They pondered mankind's origins, realising there must have been a day with no yesterday - a day of creation - prompting the age-old question of where did the universe come from? Brian marvels that the universe seems to follow a set of rules, the laws of physics, allowing space to be considered on the grandest scale, travelling to the most distant, farthest reaches of the cosmos just by using our minds. Brian also visits Japan, and offers viewers the idea that man lives in just one of an infinite number of universes that are being made all the time.

Imagine a tornado so powerful, it can form a planet, or winds sweeping across a planet but blowing at 6,000 miles per hour! How about rain....made of iron? Sounds like science fiction, but this type of weather is occurring daily in our solar system. Scientists are just beginning to unlock the secrets of these planets and their atmospheres. Can this research help scientists solve long unanswered questions that we have about Earth? As our own planet churns with the effects of global warming, it's natural to look into the heavens and wonder about the rest of the real estate.