The defeated Cato and Scipio fall back on the African city of Utica after the Battle of Thapsus where they decide to end it all. Caesar, after two years of fighting in Greece and Egypt, returns to Rome and receives a hero's welcome.
Meanwhile, Servilia's cold rage against the Julii clan makes Brutus's submission to Caesar even more painful. Octavian returns home from military school and Caesar, impressed with his nephew's incisive political acumen, appoints him a pontiff despite his youth.

In Egypt, Caesar rebukes the advisers of the boy king, Ptolemy XIII, for their presumption in eliminating Pompey and demands the man who killed him. Caesar decides to intervene in the dispute between Ptolemy and his sister-wife, Cleopatra, to ensure both Rome's grain supply and his own access to Egypt's treasure.
Antony, in an unusual show of prudence, advises against this with only half a legion in Alexandria and Cato and Scipio still at large in Africa. In Rome, Brutus gets a chilly reception from Servilia when he returns home from Greece.

As they prepare their counterattack against Caesar, Pompey's Republicans begin to squabble over both the anticipated spoils and the method of finishing Caesar off. Badly outnumbered, Caesar and Antony make their stand at Pharsalus. As they try to reach Caesar in Greece, the shipwrecked Vorenus and Pullo confront an unexpected dilemma.
Back in Rome, Atia again sends Octavia to beg protection from Servilia, who complies readily to encourage her growing friendship with Octavia. Niobe's sister Lyde comes back to see her and comforts her over Vorenus's disappearance.

Caesar pursued Pompey to Greece but the tide has turned and it's Caesar who is on the run. He contacts Mark Antony, who he left in charge in Rome, to come and join him with the 13th Legion but Antony seems to be in no hurry.
Vorenus has re-enlisted in Antony's Legion and he and Niobe have begun to renew their marital relationship. The presence of Niobe's sister is the only sour note in their house. Pullo meanwhile continues to train young Octavian in the use of arms and the boy's mother Atia is so pleased with his development that she decides he should take another.

Caesar contemplates Pompey's counteroffer but Mark Anthony wishes the war. Vorenus continues to struggle as a businessman and must reevaluate his career choice. Atia schemes to come between Caesar and Servilia and Pullo seeks Octavian's help.

Pompey wants to find out what happened to the gold from the Roman Treasury and sends his son Quintus to Rome to find out what happened. Atia and her family have stayed behind when Pompey and others fled and she now throws a party for her triumphant uncle, Julius Caesar. She clearly has her sights set on the great leader and is puzzled when he sends her a guest list that includes Servilia of the Junii. She soon finds out why.