Jean Hargadon Wehner discusses how she came to remember years later the sexual abuse she suffered at Archbishop Keough High School. She also talks about what happened when she reported the abuse to Church officials and how she realized she was connected to the death of Sister Cathy Cesnik.
As the can of worms is opened on the hidden world in the high school and the people begin to talk about what happened behind closed doors. With the Jean’s accusations, Abbie Schaub, Gemma Hoskins, and Tom Nugent learn about a story of a graveyard and a source nicknamed 'Deep Throat' who could hold the key.

Deep Throat comes forward with the orders of anonymity with the horror story of what happened in 1994 with the charges against Maskell. With the location of a secret grave of documents, Deep Throat’s story contradicts the story of the former state’s attorney Sharon A.H. May. The group begins to investigate Dr. Richter who worked with Maskell to groom girls and their families.
As the case prepares for a potential trial, the disappearance of Father Maskell causes problems as the prosecutors find themselves defending the idea of repressed memories. When things fall apart, victims still find themselves seeking justice. Abbie and Gemma seek the links between Jean and the killer... which leads to a man named Brother Bob.

Bonnie and Marshall - 'Ti' and 'Do' turn to recording their lessons to teach their followers how to transcend, and the intense rule and check partner system is set-up. The renaming of the members, the haircuts, and the clothing style also are changed to fit an androgynous look.
When Ti is given a cancer diagnosis, the dynamic of the group changes. After Ti dies from cancer in 1985, a distraught Do briefly allows members to visit their families. When the members return, Do becomes more controlling.

The message of the group begins to change and losing identity and group mentality is pushed. With more lockdowns and rules, longtime members of the group begin to question or leave. With no sex permitted with members, Dick Joslyn’s membership in the cult poses problem for Do... leading to a new request for the group.
With dwindling numbers, the group needs a new boost of membership. The Exit begins to be discussed as the Hale-Bopp Comet approaches.

Feast your eyes on a reconstruction of the mega-city and its amazing buildings. Alexandria, built in the middle of rancid marshland, had become in less than a century, the greatest city of the Mediterranean. An ideal position at the crossroads of east and west, and one that brought her great riches. Huge, modern, gleaming white and cosmopolitan, like no other in antiquity, it created its own identity.
While the beauty of its planning, its great arteries, its temples and its ports would be equalled only by its openness to the rest of the world. And the monumental achievements of its sovereigns, still shrouded in mystery, we'll never cease to fire our imagination for millennia to come.

The Hale-Bopp Comet is passing Earth and rumours of a mysterious object following the comet could mean the sign that the Heaven’s Gate community could be looking for. With plans for the Exit, the group members begin saying goodbye to the world. In the aftermath of the suicides, the world and the surviving former followers react.